PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 315aa MW: 36413.4 Da PI: 6.8636

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009621085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.3e-18	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l++ ++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_009621085.1 25 RGPWTVEEDFTLINFIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 72 89********************************************97 PP
2	Myb_DNA-binding	51.3	2.6e-16	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_009621085.1 78 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.744	20	72	IPR017930	Myb domain
SuperFamily	SSF46689	1.16E-30	22	119	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-15	24	74	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-16	25	72	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-22	26	79	IPR009057	Homeodomain-like
CDD	cd00167	1.46E-11	27	72	No hit	No description
PROSITE profile	PS51294	23.246	73	127	IPR017930	Myb domain
SMART	SM00717	1.3E-14	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-15	78	121	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-23	80	126	IPR009057	Homeodomain-like
CDD	cd00167	3.54E-7	98	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDHNKIKVGF KNNNQEREED LDLRRGPWTV EEDFTLINFI AHHGEGRWNS LARCAGLKRT 60 GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR 120 TRVQKHAKQL KCDVNSKQFK DTMKYLWMPR LVERIQAAAA TSGTTVASSS TTTYIQNQEN 180 QQPLPNISTM SEVNVPVQLT NNVDKTNGLN YSSTIFTLEN SSTTASSDNS SSDLTDCCYN 240 FPINQSVNQD YVQVNQSNQV CYGDQYLTSP TGYFNPGYFQ ALDQQNSHQL MDGEYGSDNS 300 WNIEDVWFLQ QQFNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-24	22	119	24	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621085.1	0.0	PREDICTED: transcription factor MYB108-like
Refseq	XP_016479574.1	0.0	PREDICTED: transcription factor MYB108-like
Swissprot	Q9FGY3	3e-91	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A1S4ASB2	0.0	A0A1S4ASB2_TOBAC; transcription factor MYB108-like
STRING	XP_009621085.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1397	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	9e-86	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]