PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620849.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 327aa    MW: 36471.5 Da    PI: 7.8675
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.83.4e-2952149389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ k++i++l+ ++ ++  ++  +++++  a+n +++        
  XP_009620849.1  52 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATKHEIDKLPPLQIPPGYFAqFQGDHHFDAANLRAKskvidtdt 146
                     78*************************************************************77777555322222222221111122333333 PP

             TCP  89 ..k 89 
                        
  XP_009620849.1 147 vyG 149
                     321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.24753111IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-2653147IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNSSGNNFQA KQESGGTNNS KLLTSKATTS TSSRQWGGFK NPRIVRVSRT FGGKDRHSKV  60
CTIRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL IEATKHEIDK LPPLQIPPGY  120
FAQFQGDHHF DAANLRAKSK VIDTDTVYGK NKSIASNEQE NQEEIGGYVP QISAQSFFPL  180
VNKSPNLPGL INSSMPFNSY YPWEPNSNLS LAHFGQPQIE ESSQNNFPLS LASSLSLPSG  240
SQLYFNPTAT TFSPMISPYM TNYPIESDPR AQLNHFHFLS SSSQHVLPNP SVPTLNLIKP  300
FSLNDNPRWI HSREDEDDSQ PHEGGDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1958112155Putative transcription factor PCF6
5zkt_B5e-1958112155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620849.10.0PREDICTED: transcription factor TCP5
RefseqXP_009620850.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A1S3YDZ20.0A0A1S3YDZ2_TOBAC; transcription factor TCP5-like
TrEMBLA0A1U7WT270.0A0A1U7WT27_NICSY; transcription factor TCP5-like
STRINGXP_009620849.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5