PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009620738.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 237aa MW: 27457.9 Da PI: 7.6468

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009620738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.2e-11	89	141	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h +Er RR+++ + + Lr+l P + ++K s ++ + Av+YIk+Lq XP_009620738.1 89 KKVVHRNVERHRRQEMANLLTSLRSLFPLEF--IKGKRSASDHMQIAVNYIKHLQ 141 6788***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-13	85	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-8	86	145	No hit	No description
PROSITE profile	PS50888	12.703	88	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	89	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-10	89	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDNYLWEIFS CKQNIEQDHD HHHHQLLQIP NFQLNGFCQQ DQIPNQDLIG GPREISSFNN 60 NNNYASVPTT PSSVNRRQEI TISSNDDSKK VVHRNVERHR RQEMANLLTS LRSLFPLEFI 120 KGKRSASDHM QIAVNYIKHL QKNIEELDNR RKQIKNSLDN LGAKNGSSSA SYVHNNFVTV 180 NICQDGMEIL INVNSHKEEM FPLSKVLRWL LLEGLNVVSC VNSKQDEWTL IRIQCQV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620738.1	1e-176	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S3ZDB4	1e-173	A0A1S3ZDB4_TOBAC; transcription factor bHLH118-like
STRING	XP_009620738.1	1e-175	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	9e-30	bHLH family protein