PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009620571.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27082.6 Da PI: 9.4004 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.1 | 9e-10 | 165 | 212 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq XP_009620571.1 165 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 212 8*************************9....89999***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.60E-9 | 159 | 216 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-15 | 159 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.634 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 161 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-7 | 165 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-9 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGEMGTGSSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPPP IFPSDAALID 60 RASKFSVFAA GYSPESNSTL SNSCSKSLLV KQEPLDSEFN QNSSPVTFSN PTVNQKTTKR 120 KEREKKVKET SSKKGKKSTN NTSEDDAEKL PYVHVRARRG QATDSHSLAE RARREKINAR 180 MKLLQELVPG CNKISGTAMV LDEIINHVQS LQRQVEFLSM RLAAVNPRVD FNLDNLFAPE 240 RFF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016478982.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X3 | ||||
Swissprot | Q8VZ02 | 7e-64 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A1S4AQF8 | 1e-179 | A0A1S4AQF8_TOBAC; transcription factor bHLH48-like isoform X3 | ||||
STRING | XP_009620567.1 | 1e-177 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-59 | bHLH family protein |
Publications ? help Back to Top | |||
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