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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009620570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 33357.3 Da PI: 7.7831 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.5 | 2e-07 | 165 | 191 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + XP_009620570.1 165 SHSLAERARREKINARMKLLQELVPGC 191 8************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.80E-5 | 159 | 193 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-8 | 159 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.464 | 161 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 164 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-5 | 165 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGEMGTGSSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPPP IFPSDAALID 60 RASKFSVFAA GYSPESNSTL SNSCSKSLLV KQEPLDSEFN QNSSPVTFSN PTVNQKTTKR 120 KEREKKVKET SSKKGKKSTN NTSEDDAEKL PYVHVRARRG QATDSHSLAE RARREKINAR 180 MKLLQELVPG CNKFLSMRLA AVNPRVDFNL DNLFAPERSG SHVESNLPDM IVPPMWADGQ 240 TSGNRNQYQH FWHLEGIHQP VWGRVEDNSS FVTPENSLLT YDSSANSASL HQNQLKMEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620567.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X3 | ||||
Refseq | XP_016478979.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X1 | ||||
TrEMBL | A0A1S4AQM2 | 0.0 | A0A1S4AQM2_TOBAC; transcription factor bHLH48-like isoform X1 | ||||
STRING | XP_009620567.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 1e-47 | bHLH family protein |