PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620570.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 299aa    MW: 33357.3 Da    PI: 7.7831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52e-07165191430
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                     +h+ +Er RR++iN ++  L+el+P +
  XP_009620570.1 165 SHSLAERARREKINARMKLLQELVPGC 191
                     8************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.80E-5159193No hitNo description
SuperFamilySSF474595.63E-8159193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.464161226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-8164193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-5165191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGEMGTGSSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPPP IFPSDAALID  60
RASKFSVFAA GYSPESNSTL SNSCSKSLLV KQEPLDSEFN QNSSPVTFSN PTVNQKTTKR  120
KEREKKVKET SSKKGKKSTN NTSEDDAEKL PYVHVRARRG QATDSHSLAE RARREKINAR  180
MKLLQELVPG CNKFLSMRLA AVNPRVDFNL DNLFAPERSG SHVESNLPDM IVPPMWADGQ  240
TSGNRNQYQH FWHLEGIHQP VWGRVEDNSS FVTPENSLLT YDSSANSASL HQNQLKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620567.10.0PREDICTED: transcription factor bHLH48-like isoform X3
RefseqXP_016478979.10.0PREDICTED: transcription factor bHLH48-like isoform X1
TrEMBLA0A1S4AQM20.0A0A1S4AQM2_TOBAC; transcription factor bHLH48-like isoform X1
STRINGXP_009620567.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-47bHLH family protein