PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009620568.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 315aa MW: 35464.2 Da PI: 8.3599

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009620568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq XP_009620568.1 165 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 212 8***********************9....89999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.41E-9	159	216	No hit	No description
SuperFamily	SSF47459	2.36E-15	159	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-15	161	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-7	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-9	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGEMGTGSSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPPP IFPSDAALID 60 RASKFSVFAA GYSPESNSTL SNSCSKSLLV KQEPLDSEFN QNSSPVTFSN PTVNQKTTKR 120 KEREKKVKET SSKKGKKSTN NTSEDDAEKL PYVHVRARRG QATDSHSLAE RARREKINAR 180 MKLLQELVPG CNKISGTAMV LDEIINHVQS LQRQVEFLSM RLAAVNPRVD FNLDNLFAPE 240 LKGCQSPYYN VASLWSYLCQ SQSWPSIHIP EKRRIFHVIL TVDISASCNF SHHDFYNALN 300 ENVLYLIMFY CNVFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620568.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X4
Refseq	XP_016478981.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X2
Swissprot	Q8VZ02	3e-65	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A1S4AQX2	0.0	A0A1S4AQX2_TOBAC; transcription factor bHLH48-like isoform X2
STRING	XP_009620567.1	1e-175	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-59	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]