PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009620411.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 282aa MW: 31930.9 Da PI: 8.2053

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009620411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.6e-08	161	208	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq XP_009620411.1 161 SHSLAERVRRGKINERLKCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 208 8***********************8....3569999*********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.58E-10	155	212	No hit	No description
SuperFamily	SSF47459	3.27E-16	155	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.339	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-16	157	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	161	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-9	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MAYHLLNPDM QINNPPFSVF NIDSSLNFNN QFPELNLNPT SLEMSNFNFQ SFVGFSHENI 60 LTQTPEFPVC LTANFHGIFQ EDDKNKVTIQ ARNDINESKK RKTIETPESS SAYSSPAVSW 120 SGTKRKTSKG KGKKVKSDEK EEDNPRQVVH VRAKRGQATD SHSLAERVRR GKINERLKCL 180 QDIVPGCYKS MGMAVMLDEI INYVQSLQNQ VEFLSMKLSA ASTYNNFNSE TYILETLQRA 240 KAYEAHIMQK LRKEGCEGVA SSNQIGPLDH SFGCYPQLPY NT

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620411.1	0.0	PREDICTED: transcription factor BEE 3-like
Refseq	XP_016485602.1	0.0	PREDICTED: transcription factor BEE 3-like
Swissprot	Q8GWK7	4e-57	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A1S4B9T6	0.0	A0A1S4B9T6_TOBAC; transcription factor BEE 3-like
STRING	XP_009620411.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	2e-56	BR enhanced expression 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]