PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009620310.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 358aa MW: 39733.4 Da PI: 7.1786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009620310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00047	222	260	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_009620310.1 222 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 260 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-10	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.95E-6	220	264	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-7	224	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MHRGVMQKSP VQQMMGGSPN WWNINNMRPP ISHQQIAATV PSLLAPNNNH FSPTVALPSS 60 SSSSLPPWND NQEQLPESWS QLLLGGLVGE EEKSVHLSNM QAVKSKLENN WEEQSTFLSQ 120 AADSVIDVNQ KNFMYEHVNN VDFHHQTEIT GKPTWSHMMP LSSPKSCVTT LSSNMLDFSN 180 KSDTRHPPPD HSSECNSRAT SGAPNKKARV QPSSTQSTFK VRKEKLGDRI TALHQLVSPF 240 GKTDTASVLL EAIGYIRFLQ SQIEALSLPY LGSGSGNMRQ QHQQSVQERN SLFPEDPGQL 300 SNDNCLKRMA TSEQYYHEES KKDLRSRGLC LVPLSCTLQV GSDNGADYWA PAFGGGFR

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MHRGVMQKSP VQQMMGGSPN WWNINNMRPP ISHQQIAATV PSLLAPNNNH FSPTVALPSS  60
SSSSLPPWND NQEQLPESWS QLLLGGLVGE EEKSVHLSNM QAVKSKLENN WEEQSTFLSQ  120
AADSVIDVNQ KNFMYEHVNN VDFHHQTEIT GKPTWSHMMP LSSPKSCVTT LSSNMLDFSN  180
KSDTRHPPPD HSSECNSRAT SGAPNKKARV QPSSTQSTFK VRKEKLGDRI TALHQLVSPF  240
GKTDTASVLL EAIGYIRFLQ SQIEALSLPY LGSGSGNMRQ QHQQSVQERN SLFPEDPGQL  300
SNDNCLKRMA TSEQYYHEES KKDLRSRGLC LVPLSCTLQV GSDNGADYWA PAFGGGFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620310.1	0.0	PREDICTED: transcription factor bHLH68
Swissprot	Q8S3D1	4e-96	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A1S4C2P2	0.0	A0A1S4C2P2_TOBAC; transcription factor bHLH68-like
STRING	XP_009620310.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-97	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]