PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620251.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 518aa    MW: 56873.5 Da    PI: 9.6054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_009620251.1 60 FICEICNKGFQRDQNLQLHRRGH 82
                    89*******************88 PP
2zf-C2H2130.00031137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_009620251.1 137 WKCEKCSKKYAVQSDWKAHTKIC 159
                     58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-75982No hitNo description
SMARTSM003550.0226082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456082IPR007087Zinc finger, C2H2
PfamPF121716.2E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM0035590102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-5125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-7132157No hitNo description
SMARTSM00355130137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MMSDDGLSSL PFIQDPNPSN NPNPNSNPSA KRKRNLPGKP DPDAEVIALS PKSLMATNRF  60
ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNKNEVIKKK VYICPEKTCI HHDPSRALGD  120
LTGIKKHYSR KHGEKKWKCE KCSKKYAVQS DWKAHTKICG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAE ESARFTSVPS TTNLNFRNEL LSGGMISGNP QFGNSLFRPE FMGLGLDPAI  240
NQLNVDGQKP RIPLWLDNNI NPNSGNNPND FLVASSSSNS NLPHQLVQMA PPHNNQQWFI  300
NGGGDDSGFG STSSLPSRVL KEEEENKRNL SETISSMYYN SHHQETTTTT PSHMSATALL  360
QKAAQMGSTR SNSALFGNGF GLMGSSFSKN NGQFAADQNL NGLMMNSPPS AVSTLTTTNN  420
NNNNNQAGNR LLLGGDLMNS SLLEGNSSAK NSNPFLMLNN KGKQVNLSGN EAIEGSLTRD  480
FLGVGGNENR PFLSKNELAK FGNTSTSAMG LSQYNGSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-37133198368Zinc finger protein JACKDAW
5b3h_F4e-37133198368Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-171HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620251.10.0PREDICTED: protein indeterminate-domain 9-like
TrEMBLA0A1S4C5N70.0A0A1S4C5N7_TOBAC; zinc finger protein JACKDAW-like
STRINGXP_009620251.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-104C2H2-like zinc finger protein