PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620226.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 440aa    MW: 49067.7 Da    PI: 7.0322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166181323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+k Fs+   L  H+r H
  XP_009620226.1 61 CHVCNKGFSSGKALGGHMRIH 81
                    *******************99 PP
2zf-C2H214.20.00013123142221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C++Cgk F++  +L  H+r
  XP_009620226.1 123 TCSICGKNFPSMKSLFGHMR 142
                     6******************8 PP
3zf-C2H210.90.0014316331116
                     EEETTTTEEESSHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnL 16 
                     ykC+ C ksF +++ L
  XP_009620226.1 316 YKCNTCEKSFATHHAL 331
                     9**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.115981IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5155986IPR007087Zinc finger, C2H2
PfamPF139121.8E-85981IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-96081No hitNo description
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-9117144No hitNo description
SMARTSM003550.018122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598122144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-4123144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
PfamPF139125.9E-8124146IPR007087Zinc finger, C2H2
SMARTSM00355150316346IPR015880Zinc finger, C2H2-like
PfamPF139120.1316332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVDYQDHRVG NETLWIKLKI SEKDVLKDHR QVPVEDHEYD QVDEDEDEVE IPKNNDSRRI  60
CHVCNKGFSS GKALGGHMRI HVQAAKKGKR LKPLVDKKRI LQQQDLHGQV DFENYNNQLQ  120
PPTCSICGKN FPSMKSLFGH MRCHPERAWR GIQPPVNNKN TCLSSSVSDE IDAKTASATA  180
TISGDLSKSV PGWSVTAKRG RKPIAEATND DKEQLDDVVH HLMLLANGNS LESGLTGDRC  240
YYNKHGIPEE ELEITNSNSV TSKTEAHEEL ASHVNENKKR RKKVKLRFLG SVQDAANPVT  300
LVNDQNPAIV TPPEKYKCNT CEKSFATHHA LGVGVGVGVG GHRSSHNKFR MVIQNSNVGT  360
SYSMIDPVNA SSSKNGNKNF TTNIRCQWGS PIGPSSSQLT SPGEVSGRRI LDFDLNELPP  420
YEDEDEVAGD HEYFQFFQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277281KKRRK
2277282KKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0004549e-35AB000454.1 Petunia hybrida taz1 mRNA for tapetum-specific zinc finger protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620226.10.0PREDICTED: zinc finger protein Xfin-like
TrEMBLA0A1S3XX670.0A0A1S3XX67_TOBAC; zinc finger protein Xfin-like
STRINGXP_009620226.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-20C2H2 family protein