![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009620178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 29513.9 Da PI: 7.9541 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.7 | 4.8e-27 | 88 | 142 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt+eLHe+Fv+av++LGG+ +A P++i++ m+v +tl+h+kSHLQkYR+ XP_009620178.1 88 KPRMKWTEELHESFVNAVAELGGAWEAKPRAIKRKMQVTAITLYHIKSHLQKYRM 142 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.81E-14 | 87 | 145 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 88 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-22 | 88 | 143 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-8 | 90 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MFPLVPFAMN DNSRQYRRIP ILDRQFQEQL NPLPLNNLQG SLANQSHQPL RFLGKLNVMN 60 NYDDNNLRFF DVNVPQVEQE VEQPRLVKPR MKWTEELHES FVNAVAELGG AWEAKPRAIK 120 RKMQVTAITL YHIKSHLQKY RMAQEPDGAR RRKAMKKLSL EERQQKLLHE VEMKEVVMKS 180 HTMLPFEDQA SSSKSVPRLP QFSSITLAPP AADVYIPQPP TEAANVHVPP EMEDMVAQSI 240 VENSVEDFLR ALELAP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 88 | 144 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 88 | 144 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 88 | 144 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 88 | 144 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 88 | 144 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 88 | 144 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 88 | 144 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 88 | 144 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018631775.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
TrEMBL | A0A1U7X2C7 | 1e-146 | A0A1U7X2C7_NICSY; uncharacterized protein LOC104234442 isoform X2 | ||||
STRING | XP_009620178.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15338 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12730.1 | 4e-20 | G2-like family protein |