PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620109.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 535aa    MW: 60543.8 Da    PI: 6.2183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.6e-0789111427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C f++  G+C  G+rC+F Hgp
  XP_009620109.1  89 VPCYFYFN-GYCIKGERCSFLHGP 111
                     69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.174635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0092734IPR000571Zinc finger, CCCH-type
PfamPF156634.4E-11764No hitNo description
PROSITE profilePS5010310.3143763IPR000571Zinc finger, CCCH-type
SMARTSM003560.553962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-685110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.27785112IPR000571Zinc finger, CCCH-type
SMARTSM003560.002886111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-590113IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-490111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MEEELLKRNT DCVYFLASPL TCKKGIECEY RHSEIARLNP RDCWYWLAGS CLNPTCAFRH  60
PPLESHAETS SESAPPQHKS AVPVNKTNVP CYFYFNGYCI KGERCSFLHG PDDGTTTWKS  120
SKIASGVPDG PTAEKKTSVG SETGPASVEK PSNSSETGSK AAAHEYIKSQ VDLLSMTNDV  180
GEQSASHETS GSPSEEATAV RLDSLVPAEG FTQGGSDLSP DWSSDEEVED NVEREEWLES  240
SPGFDVLVDD RIEGWSHKDD HSYLLQHDRE CDERFAGYDF ENNLEYDPAY PDMRIVSDEE  300
LDDSYYSKVE SHEVNEYARE IVIPAHGRQS IPHKRKFPRE PGFCARGNVD LRDLLKKRRV  360
IESDPPNYLS RRLDLSRFNA REQCRDRHRP QGSRWMPQSL ASKLESNSSF SSGFVDATRL  420
EGANQLKKLR QSHRSSYRQQ HFKDRRRGRS QPFANETPRR MASRQRSTEV PKIFGGPKTL  480
AQIREEKIKG REDGNSFERT VPSGGSERED FSGPKPLSEI LKDKRRLSSV VNFSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127682e-33AC212768.1 Solanum lycopersicum DNA sequence from clone LE_HBa-206G16 on chromosome 12, complete sequence.
GenBankHG9754512e-33HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755242e-33HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620109.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A1S3ZXZ90.0A0A1S3ZXZ9_TOBAC; zinc finger CCCH domain-containing protein 32-like
STRINGXP_009620109.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11433911