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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009620077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 38867.7 Da PI: 8.1616 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.1e-11 | 299 | 344 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++I+ Lq XP_009620077.1 299 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 344 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.954 | 293 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-15 | 296 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.24E-11 | 297 | 348 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-14 | 298 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-8 | 299 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-12 | 299 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MYPSSTSSSS QNSMSHSTTA GGGSNGGGGL TRYGSAPGSF LTTAVESVIG ANNHDFNLHG 60 SHHQHLGPSR YFSPNMTSSN SLNSESTSKA KEQSSLQRSI GFNDLTIGSG GGGGGGGCGV 120 MPAASSSTTP LVRHSSSPAR FLNQLAAAAG DTVSMGRGSY NSKGVADSSR GITRLNSQLS 180 FTRQEALSQI AEENEDVEGT STDNGHRKST NSYATASSFA MGSWEDNNSI MFSVTPSKRA 240 KHISNDIVNG LDDGETQFQF GLSQTALEMA SMDRLLHIPE DSVPCKIRAK RGCATHPRSI 300 AERERRTRIS GKLKKLQDLV PNMDKQTSYA DMLDLAVQHI RTLQDQVQNL NTELENCKCG 360 CKKSSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU123519 | 0.0 | EU123519.1 Nicotiana tabacum MYC mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620077.1 | 0.0 | PREDICTED: transcription factor bHLH128-like isoform X2 | ||||
Swissprot | Q8H102 | 2e-77 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A1J6IJE4 | 0.0 | A0A1J6IJE4_NICAT; Transcription factor bhlh128 | ||||
STRING | XP_009620076.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 3e-70 | bHLH family protein |
Publications ? help Back to Top | |||
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