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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009619775.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 183aa MW: 20627.5 Da PI: 8.4848 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 37.6 | 4e-12 | 17 | 66 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
+ +E++RR++++ + +L +l+P++ ++s+ ls + Le+A++YIk Lq
XP_009619775.1 17 RKTIEKNRRNQMKALYLKLHSLVPNQ--QHSREvLSLPDQLEEAINYIKRLQ 66
6789*********************6..488889*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 5.63E-7 | 10 | 70 | No hit | No description |
| SuperFamily | SSF47459 | 6.41E-12 | 11 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 11.661 | 12 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 7.0E-11 | 14 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.1E-8 | 18 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 183 aa Download sequence Send to blast |
MEQQCNNPSS SSSKADRKTI EKNRRNQMKA LYLKLHSLVP NQQHSREVLS LPDQLEEAIN 60 YIKRLQIDLE RMTQKKDSLK RGENSSSNSS CGRKTGLSLP HIEIHSVDSA LQVVLTTGLD 120 YQFIFTDVIR LLHEEGVQVI NASYTLICDT IVHSIHSKMG ECAPDQYGAA RISERLKKFV 180 GGC |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009619775.1 | 1e-134 | PREDICTED: transcription factor bHLH55-like | ||||
| Refseq | XP_016435311.1 | 1e-134 | PREDICTED: transcription factor bHLH55-like | ||||
| TrEMBL | A0A1S3X639 | 1e-133 | A0A1S3X639_TOBAC; transcription factor bHLH55-like | ||||
| STRING | XP_009619775.1 | 1e-134 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5105 | 21 | 31 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 5e-37 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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