PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009619707.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 359aa MW: 41911.2 Da PI: 6.9632

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009619707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.7	5.3e-25	30	118	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +YneYA +GFsvrk++ +k++ ++ +t+r+++C+keg+r ++k++ + +++r+etrtgC a++ v++++++++++t++e++HnH l+p XP_009619707.1 30 WYNEYAAAIGFSVRKEYANKNRVHEYVTSRKLTCYKEGYRGKDKRD-PTVQKHRKETRTGCLAHVIVSRQSNERFRITSFEEKHNHLLVP 118 7****************************************999.889999*******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-22	30	118	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-28	216	310	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEISSDSQSG CNVPIKLGME FDSDEHAYDW YNEYAAAIGF SVRKEYANKN RVHEYVTSRK 60 LTCYKEGYRG KDKRDPTVQK HRKETRTGCL AHVIVSRQSN ERFRITSFEE KHNHLLVPPS 120 LVHLLPSQRK IKMAQAYEID LLEDSGIRPK ASFDYAARQA GGQSFLGYTT RDHKNYLRDK 180 RTDSLKHGVA HDEGLITNIF WADGKMIRDF KIYGDVVSFD TTYRTNKEYR PLPLFVGLNN 240 HREMVIFGAA LLYEESAESF EWLFNAFFRI MSAEKPQTFI TDQDPAISFA VLLVMPQTYH 300 RLCVWHLEKN AFKHLNHVFR AHASFPGDFS KLLYDYEYED DFLSAWQEML EKYDLGDNN

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEISSDSQSG CNVPIKLGME FDSDEHAYDW YNEYAAAIGF SVRKEYANKN RVHEYVTSRK  60
LTCYKEGYRG KDKRDPTVQK HRKETRTGCL AHVIVSRQSN ERFRITSFEE KHNHLLVPPS  120
LVHLLPSQRK IKMAQAYEID LLEDSGIRPK ASFDYAARQA GGQSFLGYTT RDHKNYLRDK  180
RTDSLKHGVA HDEGLITNIF WADGKMIRDF KIYGDVVSFD TTYRTNKEYR PLPLFVGLNN  240
HREMVIFGAA LLYEESAESF EWLFNAFFRI MSAEKPQTFI TDQDPAISFA VLLVMPQTYH  300
RLCVWHLEKN AFKHLNHVFR AHASFPGDFS KLLYDYEYED DFLSAWQEML EKYDLGDNN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016463957.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3ZI80	0.0	A0A1S3ZI80_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009619707.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-66	FAR1-related sequence 5