PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619639.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 298aa    MW: 33215.3 Da    PI: 6.517
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619639.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.88e-18128182256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  L+k+l+L  rqV vWFqNrRa+ k
  XP_009619639.1 128 RKKLRLSKEQAALLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTK 182
                     788899***********************************************98 PP
2HD-ZIP_I/II125.13.3e-40128217191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq++lLEe+F+e+++L+p++K +l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l
  XP_009619639.1 128 RKKLRLSKEQAALLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVTELR-AL 217
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
PfamPF046184.5E-164104IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466898.13E-18121185IPR009057Homeodomain-like
PROSITE profilePS5007116.876124184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-17124187IPR009057Homeodomain-like
SMARTSM003892.3E-14126188IPR001356Homeobox domain
PfamPF000463.2E-15128182IPR001356Homeobox domain
CDDcd000868.36E-15128185No hitNo description
PROSITE patternPS000270159182IPR017970Homeobox, conserved site
PfamPF021838.7E-11184218IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-25184227IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGGEKEDGLG LSLSLGMSCP QNNLKNNDFI SSSTPPFLLP FLHNHQISAE RNEEAKESIR  60
GEIDMNQPAR MIESCDEELE DEGLIMVSSP NNSTVSSVSG KRSHDREDNE GERPTSSLED  120
DGGDAAARKK LRLSKEQAAL LEETFKEHNT LNPKQKLALS KQLNLRPRQV EVWFQNRRAR  180
TKLKQTEVDC EYLRRCCENL TEENRRLQKE VTELRALKLS PQMYMNMTPP TTLTMCPQCE  240
RVAVSSSSSS AASSSVTGAG VSRSNHPVGA LHQPPVPLNK PWAAIFSPKT LDVQRTQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136131e-158BT013613.1 Lycopersicon esculentum clone 132414F, mRNA sequence.
GenBankX912121e-158X91212.1 L.esculentum mRNA for HD-ZIP protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619639.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_016462220.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466022e-80HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A1S3ZCP50.0A0A1S3ZCP5_TOBAC; homeobox-leucine zipper protein HAT3-like
STRINGXP_009619639.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11182485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-74homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]