PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619629.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 250aa    MW: 28361.9 Da    PI: 9.8625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.4e-161199198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffkv++p   + ++ l++p  f+ + +g+k e  + tl++    +W+v++   +++++ +++ kGW++Fv+  +Lk gDf vF++ g+++f   v++
  XP_009619629.1 11 FFKVMVP---GFHAKLTIPPAFCLKLKGEKSE--KGTLKH-GKGTWNVEI--GRSKNGvMWFDKGWEQFVQNYNLKIGDFAVFEHLGNMNF--SVSL 97
                    6777744...456679*******999887555..566666.4569*****..777777799************************999999..7777 PP

                    E- CS
              B3 97 fr 98
                    ++
  XP_009619629.1 98 LD 99
                    66 PP
2B350.83e-161632381488
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       l +p +f+ ++ +   +++t+tl  +sg s  v l+++ ++++  +++t+GW++F ++n+Lk+gD+++F+ d++ s
  XP_009619629.1 163 PYLHIPTEFCHSNALL--QNTTITLIGPSGISCPVSLRICPGGKTlyVIMTTGWRDFFSSNKLKVGDVCIFQIDRTnS 238
                     4589******999877..6779***************8877777798999**********************887634 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.7878101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-219103IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-16999No hitNo description
SuperFamilySSF1019361.31E-1810103IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.4E-1511101IPR003340B3 DNA binding domain
PfamPF023624.5E-131198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-17146244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-17148235IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-5149242IPR003340B3 DNA binding domain
CDDcd100177.30E-15149238No hitNo description
PROSITE profilePS5086311.039150250IPR003340B3 DNA binding domain
PfamPF023621.9E-13164239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENELPISRR FFKVMVPGFH AKLTIPPAFC LKLKGEKSEK GTLKHGKGTW NVEIGRSKNG  60
VMWFDKGWEQ FVQNYNLKIG DFAVFEHLGN MNFSVSLLDS TGCDKKFLML EDGKQQVPSQ  120
VKSPECRIEK RKPEGDVLIH QYVKGSSEFT ARIKEYNVRK RSPYLHIPTE FCHSNALLQN  180
TTITLIGPSG ISCPVSLRIC PGGKTLYVIM TTGWRDFFSS NKLKVGDVCI FQIDRTNSDS  240
KSITMNVRVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619629.10.0PREDICTED: putative B3 domain-containing protein REM15
RefseqXP_018631640.10.0PREDICTED: putative B3 domain-containing protein REM15
TrEMBLA0A1S3X5P50.0A0A1S3X5P5_TOBAC; putative B3 domain-containing protein REM15 isoform X1
STRINGXP_009619629.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-23B3 family protein