PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009619569.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 28162.6 Da PI: 8.3168 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.3 | 1.8e-10 | 106 | 142 | 1 | 32 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....... CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.....k 32 +r++h ++Er+RR+++N+ + Lr+l+P+++ XP_009619569.1 106 QRMTHIAVERNRRKQMNEYLTVLRSLMPSSYvqrysT 142 79***************************64355440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.47E-9 | 96 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.22E-7 | 104 | 139 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.2E-9 | 105 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.521 | 105 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-8 | 106 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MALETVVYPQ EQFGYFYNKE FYASTNSFHH SLSNWESSSC NSMMQNQVKE YNWDISNFSA 60 AACNNVVENQ LFLEGSLTKA DTSGGRRKRR RTARGSNKNR EELENQRMTH IAVERNRRKQ 120 MNEYLTVLRS LMPSSYVQRY STTHSNHANS SPAAATNSSE SAAENRSVMA DIEVNLVESH 180 ANLKILSKRR PKQLLQIVAG LQCLSLTILH LNVTTVDQMV LYTLSAKVEE GCQLTTVEEI 240 AQAVNQLLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 90 | RKRRR |
2 | 86 | 91 | RKRRRT |
3 | 106 | 117 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619569.1 | 0.0 | PREDICTED: transcription factor bHLH96-like isoform X2 | ||||
Swissprot | Q9C7T4 | 3e-56 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A1S3YS14 | 1e-156 | A0A1S3YS14_TOBAC; transcription factor bHLH96-like | ||||
STRING | XP_009619568.1 | 1e-159 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 9e-32 | bHLH family protein |
Publications ? help Back to Top | |||
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