PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619569.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 249aa    MW: 28162.6 Da    PI: 8.3168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10106142132
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....... CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.....k 32 
                     +r++h ++Er+RR+++N+ +  Lr+l+P+++      
  XP_009619569.1 106 QRMTHIAVERNRRKQMNEYLTVLRSLMPSSYvqrysT 142
                     79***************************64355440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.47E-996142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-7104139No hitNo description
Gene3DG3DSA:4.10.280.106.2E-9105140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.521105168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-8106142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MALETVVYPQ EQFGYFYNKE FYASTNSFHH SLSNWESSSC NSMMQNQVKE YNWDISNFSA  60
AACNNVVENQ LFLEGSLTKA DTSGGRRKRR RTARGSNKNR EELENQRMTH IAVERNRRKQ  120
MNEYLTVLRS LMPSSYVQRY STTHSNHANS SPAAATNSSE SAAENRSVMA DIEVNLVESH  180
ANLKILSKRR PKQLLQIVAG LQCLSLTILH LNVTTVDQMV LYTLSAKVEE GCQLTTVEEI  240
AQAVNQLLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18690RKRRR
28691RKRRRT
3106117RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619569.10.0PREDICTED: transcription factor bHLH96-like isoform X2
SwissprotQ9C7T43e-56BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S3YS141e-156A0A1S3YS14_TOBAC; transcription factor bHLH96-like
STRINGXP_009619568.11e-159(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]