PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619568.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 303aa    MW: 34185.3 Da    PI: 8.0188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-13106157155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i   A++++k+L+
  XP_009619568.1 106 QRMTHIAVERNRRKQMNEYLTVLRSLMPSS---YVQRADQASIIGGAINFVKKLE 157
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.56E-13104161No hitNo description
SuperFamilySSF474592.88E-17104176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14106175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MALETVVYPQ EQFGYFYNKE FYASTNSFHH SLSNWESSSC NSMMQNQVKE YNWDISNFSA  60
AACNNVVENQ LFLEGSLTKA DTSGGRRKRR RTARGSNKNR EELENQRMTH IAVERNRRKQ  120
MNEYLTVLRS LMPSSYVQRA DQASIIGGAI NFVKKLEQHL QTLEAQKRTS THQQQHENGI  180
SSPLFADFFS FPQYSTTHSN HANSSPAAAT NSSESAAENR SVMADIEVNL VESHANLKIL  240
SKRRPKQLLQ IVAGLQCLSL TILHLNVTTV DQMVLYTLSA KVEEGCQLTT VEEIAQAVNQ  300
LLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18690RKRRR
28691RKRRRT
3106117RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619568.10.0PREDICTED: transcription factor bHLH96-like isoform X1
SwissprotQ9C7T43e-83BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S3YS140.0A0A1S3YS14_TOBAC; transcription factor bHLH96-like
STRINGXP_009619568.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]