PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619381.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 544aa    MW: 58954.8 Da    PI: 7.0121
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.66.9e-18155241186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L+ea+ e+  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+f+q+e
  XP_009619381.1 155 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GITMSHWPWFKQME 241
                     5*************************************767778899************************99.556669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-20153243No hitNo description
Gene3DG3DSA:3.40.1160.101.5E-66292537IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.583297538IPR015963Uridylate kinase, bacteria
SuperFamilySSF536339.95E-53297537IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.91E-113300538No hitNo description
PfamPF006961.5E-22301517IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNAAVTV TPTTTTTHPS NPAYHHHHQP FSHRYKPAQI HAPPISSGSP  60
KNISGDEDGD GYSDNNNTPS YHIGVNPYDT DSNPFENDGD VNRSRLNQSN DNKRTDREDI  120
SDNGTPYNYK RSKITSSSAA SGGSGSGEFR KDREEWSDTA IACLLEAYME KFVQLNRGNL  180
RGRDWEEVAA MVSERCEKQS KSVEQCKNKV DNLKKRYKLE RHRMSNGGIT MSHWPWFKQM  240
EQIVGNSVSG KATSTSEEDK AIVAVTNSSI GRQSKRYGTA VPGPSGQIVK SKSSMGPRWR  300
RVVLKISGAA LAGATPNAND PNNLDPKVAM LVAREVSIAC RLGIEVAIVV GGRNFFCGDT  360
WVTSTGLDRC TAYQIGMMAT MMNSILLQSA LEKLGVQTRV QSAFSMPELA EPYSRQRAIR  420
HLEKGRVVIF GGIGAGTGNP LFSTDTAAAL RASEIHADAL LKGTNVEGVD VCDSRNNNNV  480
AAEHISFREL VSGGASPLDL MAVTLCEENA IPVVIFNLHG PGNISRALCG EQVGTLIDQT  540
GRVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A7e-5629953750279Uridylate kinase
3nwy_B7e-5629953750279Uridylate kinase
3nwy_C7e-5629953750279Uridylate kinase
3nwy_D7e-5629953750279Uridylate kinase
3nwy_E7e-5629953750279Uridylate kinase
3nwy_F7e-5629953750279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619381.10.0PREDICTED: uncharacterized protein LOC104111397
RefseqXP_016513942.10.0PREDICTED: uncharacterized protein LOC107830804
TrEMBLA0A1S4DKN30.0A0A1S4DKN3_TOBAC; uncharacterized protein LOC107830804
STRINGXP_009619381.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein