PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009619177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 299aa MW: 33234.9 Da PI: 10.0315 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.9 | 2.2e-38 | 74 | 133 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+ XP_009619177.1 74 PETVLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKR 133 67889***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-36 | 58 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 76 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.376 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAFSSIPIYL DPPNWQHEQG NHQQQLGVAN ENPSQLSPAM LPPLAAGGGG GGATDSIRPG 60 SMTERARLAK VTQPETVLKC PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR YWTRGGALRN 120 VPVGGGCRRN NKRGTKRSRS KSPIRSEKRY SPITNATTSN NSIPHLPHPT HLSFLSTPNL 180 HNFSGFTSTE NGLNFGGSQP QGGTRDQMEV QARFIDQFRF QQMQQFPFFS TFEQPSNNLY 240 QFEAATEYDV GATQNVKVEE SKGTNSQGLN LPRNNLGVTN NQFWTNISGY TSTSTSQLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619177.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
TrEMBL | A0A1S3YKE3 | 0.0 | A0A1S3YKE3_TOBAC; dof zinc finger protein DOF3.6-like | ||||
STRING | XP_009619177.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1917 | 24 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 2e-51 | OBF-binding protein 3 |