PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619095.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 740aa    MW: 82191.9 Da    PI: 4.4663
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.2e-13588629346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rW+++E el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
   XP_009619095.1 588 RWSKQETELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 629
                      9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.0E-28579663No hitNo description
PROSITE profilePS5129311.203584632IPR017884SANT domain
SMARTSM007173.1E-10585633IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-11587636IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-8588629IPR009057Homeodomain-like
CDDcd001672.69E-8588629No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MVLSVLKSLS TRPFKVVESV SMDLLDDILA DGASKTVKAG GKFQPRAKPR LVKKGPAVAS  60
STVSLTSKPT GDTVATDSFE ALKKDGKNSQ NYDKQSSVLA EPSLEHPLAA ETLGPSVGSY  120
LDTSMVVPDN SEDSKTCLEK SEGEYADIYI GLDSFDDLLP ISSAIENSSP ATDPSAVHVA  180
GADKGQEQLS IPVSSVDDSA PSTSNLQPDE VAACQDPLTC QGSVVPEMDS YPSLEADILG  240
VTTTSGQSTR RFQPKSKLQV YRERYDTSIP DSDAVESVSC QPNSHSVHSE MDFVDREKEH  300
GFPADDVLDF SARGFDNNII TESTHEFPVH DEYVIEASHS DVGIPAELPE STSQMPEEPV  360
HQRPKTKKQK LPASDLSAIT EENGAGRSLR SRRKSVNANR LVDESEVVAD DGEYVPEQPN  420
DSVTNGNDED LLVENESQGK KVQKKSKRTV AEDGKQVRKS KKTTEASDQA ANKKPKKFSH  480
STRQKRRQVN KALLEAPEYE IDYQKVPIKD LIILGEHRER LAKKDAAASQ IPTTDQSAGA  540
SVSNYNEDET YPSDDGAEDN DHQIGSRAQD SSAYFNYQTY MDKTPSTRWS KQETELFYEA  600
VQQFGTDLSL IQQLFPGRTR RQLKLKYKKE ERQHPFRLHD ALTNRSKDHS HFERVIERLK  660
QIEAEELQKA DKDESTDLTG EEEVEEGTQE INEEEANSEH VEEKEVEAVE QQDVPEMESP  720
VEDYDSEDDS WRWSQYKSEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0488871e-104GU048887.1 Capsicum annuum clone BAC CaCM511O09_Contig, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619095.10.0PREDICTED: uncharacterized protein LOC104111163 isoform X2
TrEMBLA0A1S4C4I30.0A0A1S4C4I3_TOBAC; transcription factor TFIIIB component B'' homolog
STRINGXP_009619094.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-50MYB_related family protein