PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619049.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 896aa    MW: 97696.1 Da    PI: 6.6164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06479498626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     Cr++++ G C+ G++CkF+H+
  XP_009619049.1 479 CRHYLK-GRCSEGEKCKFSHD 498
                     ******.*************7 PP
2zf-CCCH21.63.9e-07532552525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+++a +G+C++G+ C F+H
  XP_009619049.1 532 PCNNYASNGFCSRGADCLFSH 552
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.507473500IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6474498IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016474499IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4478499IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027502528IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.615502526IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.925527555IPR000571Zinc finger, CCCH-type
SMARTSM003560.041530554IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5532552IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4532553IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MENSHIGALN PLQNPFPFPP HRRRPLMSQT YTTLLQILSY NCPTTDSTTE IQKLDDNGNS  60
KLGKENEVEE LVDHHLIRSD NLLVNGPAHK ESDNLVVQQG SGDGNEGSSR SGYRDFTGAQ  120
MEVDLDLSNR TSDAIQGDKG HARTNDIDDM NRLADKTHSF NDQMVEEPGN RCSTHESEVK  180
ESDPVGPVEL DKELSIDDVC AAIESCFGAD TVAELSQPAE VSGEEIPVPE TRLTEEMEHG  240
LRLKEMELET LISSAGATDL SVHVPMSKEI EEGEVSGDFM VFDESDYDIV NDVRDEKKVE  300
AEKYPADIVD LEDFAFDARD NPPQKRDAYA SSSIDAVDED YTSLGGKFIR KFGEEPKDNV  360
EKVFCSKDVE TRKVCVYDSI LDSGNVAKQV GGDMKLEHLA GFQFGATSAE KAKENKHLID  420
AAEDADIGKK KKKRGPLTKE KRAKKKAKER IKRAEKNRKL GVKRLKLPPV VKPKVVTYCR  480
HYLKGRCSEG EKCKFSHDTT PLTKSKPCCH FARQSCMKGD DCPFDHQLSK YPCNNYASNG  540
FCSRGADCLF SHEITVKIAA VTSPTASNLE LMSPSAPSNS NSLMQINTYG VLHKDVNSSS  600
GSAGLVPGKR TDRTVLEPVQ KPASCTPKGV TFLSHGKSMQ GDARKHEKAG LSSKADDVGK  660
LSCQMIHSKS NNVQKPNGLM KGVSTRTPQG INFLSFGQAT SAEPSGGDTY SGLFNMDYGV  720
KKLLPGGMNN SKEAATCAKR DGSVKDDNQA NLSASLWSMN QMSTRTPHAS APRGISFLSA  780
EKAAQDISRP NEFNRASSPI QRRPSAAEKT SDEMPFRQSS SLFPAGQTLN QSAQKCSVGI  840
ASSSKTPFLA NTQPSSIQKA LQSTLAFAAK FDLGVKFGTS NGSTNITSSI NHSKDR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440448KRAKKKAKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619049.10.0PREDICTED: uncharacterized protein LOC104111140 isoform X2
TrEMBLA0A1S4B7V90.0A0A1S4B7V9_TOBAC; uncharacterized protein LOC107805435 isoform X2
STRINGXP_009619048.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.24e-06C3H family protein