PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618593.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 457aa    MW: 50157.8 Da    PI: 5.1789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.5e-11387432655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l+P+     +k  + a++L  A +YIk+L+
  XP_009618593.1 387 SIAERVRRTRISDRMRKLQDLVPNM----DKQTNTADMLDFAADYIKELE 432
                     689*********************7....688***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-15384444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.21E-11385436No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14386444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12387437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8387432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPTAVVS GGGNCGYARD DFDQLLNSRA  60
SNTDDVKQVF DRFVANIDPQ DSNPNNGLIG DTQQIQQNHM SNMNVRSEGV APTKQEHEQS  120
QARQSQNSQF IAAVKQETQQ NSDYSLASQM NYQTQAQQND NSDLTSAMDN FARFLGAADS  180
NRLNQTKMDG GFGAGSSNSN LTRYNSSPAG FFAQFDIENE YGAMRGIGGY GAGGNAAAEA  240
SFPTPNRFSS QTALQSGQPP SSGLLAPISV FGAKSIEEGR AGDESFGKGH KNDESYMTVF  300
PMPSWDDSQM LTDDFLQVPE DNEAEPFSNV NASDNQSSEG RARPPTLLSH LSLPQTSAEL  360
SAMEKLLQDS VPCKVRAKRG CATHPRSIAE RVRRTRISDR MRKLQDLVPN MDKQTNTADM  420
LDFAADYIKE LETQVKALSE RRSKCTCSNK IEDHIQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-110HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618594.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_009618595.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLA0A1S3X0U30.0A0A1S3X0U3_TOBAC; transcription factor bHLH122-like
STRINGXP_009618593.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-51bHLH family protein