PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009618566.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 423aa MW: 46323.6 Da PI: 5.9185

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009618566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.8e-16	37	81	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++v+a k++G W+ I +++g ++t+ q++s+ qk+ XP_009618566.1 37 REKWTEEEHQRFVEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 81 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.23E-16	31	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.971	32	86	IPR017930	Myb domain
TIGRFAMs	TIGR01557	8.6E-17	35	84	IPR006447	Myb domain, plants
SMART	SM00717	1.0E-12	36	84	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-9	36	77	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-13	37	80	IPR001005	SANT/Myb domain
CDD	cd00167	1.00E-9	39	82	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MISSKLETVA TQGKALTCLA NEITLKVRKP YTITKQREKW TEEEHQRFVE ALKLYGRAWR 60 QIEEHVGTKT AIQIRSHAQK FFAKVARDSG TDGDESLNAI DIPPPRPKKK PLHPYPRKMD 120 DSPITNKSVS GQPERSSSPN ASGRDSCSPD SVLSEIGSDA SEYPVAEQQS SRFSPRSCTT 180 DAHTANIISG ENDDESMTSK SNIVKEIPVA SKPVAASSSP IFNSGMECDL VPRETSCPGE 240 KLAVEAPLAS IKLFGQTVLV PDATKLALQS PGSCNSFPFK TTESEIVTNN GDVIHGFQAN 300 SQFILPVVPG NMIPPACWLL QDMLENNPEG VAAFPTTLPW WSWYQDLVYR YISSCSQTTA 360 ETAPPCQRPK DEEAHREGSS TGSSTGSASE VNDGNRSSET VESKYTTKSD KWNSREGWHV 420 IRG

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MISSKLETVA TQGKALTCLA NEITLKVRKP YTITKQREKW TEEEHQRFVE ALKLYGRAWR  60
QIEEHVGTKT AIQIRSHAQK FFAKVARDSG TDGDESLNAI DIPPPRPKKK PLHPYPRKMD  120
DSPITNKSVS GQPERSSSPN ASGRDSCSPD SVLSEIGSDA SEYPVAEQQS SRFSPRSCTT  180
DAHTANIISG ENDDESMTSK SNIVKEIPVA SKPVAASSSP IFNSGMECDL VPRETSCPGE  240
KLAVEAPLAS IKLFGQTVLV PDATKLALQS PGSCNSFPFK TTESEIVTNN GDVIHGFQAN  300
SQFILPVVPG NMIPPACWLL QDMLENNPEG VAAFPTTLPW WSWYQDLVYR YISSCSQTTA  360
ETAPPCQRPK DEEAHREGSS TGSSTGSASE VNDGNRSSET VESKYTTKSD KWNSREGWHV  420
IRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151804	1e-102	AC151804.1 Solanum demissum chromosome 5 clone PGEC475B22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618565.1	0.0	PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBL	A0A1S4BA41	0.0	A0A1S4BA41_TOBAC; protein REVEILLE 1-like isoform X1
STRING	XP_009618565.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-37	MYB_related family protein