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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009618495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 25252.7 Da PI: 9.9028 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.1 | 6.3e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskR+ g++KKA+EL +LCda+v v ifsstg+lyeyss XP_009618495.1 10 RIDNPASRQVTFSKRKSGLIKKAKELAILCDAQVGVTIFSSTGRLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 70.2 | 6.4e-24 | 81 | 169 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ a+ +++e+++L++++e Lq++ R+l+Ge+L+ + + +L+ Le+qLe l++iR+kK+++l+++ieel +k +++en +L+kk+ XP_009618495.1 81 PSSAAKLWRTEAERLRQQMEDLQENYRRLKGEELSGMRISDLHALENQLEMRLNNIRTKKEKMLTDEIEELNQKRALIHHENIELSKKV 169 5667889********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.45 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.06E-37 | 2 | 77 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-30 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-22 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.083 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MARGKIAIRR IDNPASRQVT FSKRKSGLIK KAKELAILCD AQVGVTIFSS TGRLYEYSSS 60 SMKSIFDRYN EEKEHHQLLT PSSAAKLWRT EAERLRQQME DLQENYRRLK GEELSGMRIS 120 DLHALENQLE MRLNNIRTKK EKMLTDEIEE LNQKRALIHH ENIELSKKVT LVQHENRQLH 180 KKGYGAIDIR KEEGSFSGQA KYTKLDWGYN CNNSDQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 82 | 1 | 82 | MEF2C |
5f28_B | 3e-20 | 1 | 82 | 1 | 82 | MEF2C |
5f28_C | 3e-20 | 1 | 82 | 1 | 82 | MEF2C |
5f28_D | 3e-20 | 1 | 82 | 1 | 82 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608298.1 | 1e-139 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_009608306.1 | 1e-139 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_016491418.1 | 1e-139 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_016491419.1 | 1e-139 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6EP49 | 2e-77 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1S4BRI8 | 1e-137 | A0A1S4BRI8_TOBAC; MADS-box transcription factor 23-like isoform X1 | ||||
STRING | XP_009618485.1 | 1e-160 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 5e-79 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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