PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618174.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 305aa    MW: 34562.1 Da    PI: 8.4614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.81.3e-33632031128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                     lp+G++F+P+d+e++ e+L++kv +++      +   +     i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++     
  XP_009618174.1  63 LPAGVKFDPSDHEIL-EHLEAKVISDTlklhplI---DefiLtIDGEnGICYTHPEKLP-GVNKNGQVRHFFHRPSKAYTTGTRKRRKVHteidg 152
                     799***********9.99*****99995554443...143333666657**********.666777888******************74444665 PP

             NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v+  +g l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_009618174.1 153 gETRWHKTGKTRPVYI-GGVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 203
                     5778************.**************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3857222IPR003441NAC domain
PROSITE profilePS5100533.13663222IPR003441NAC domain
PfamPF023653.5E-1464203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTWCSQSNSE TALPIIISAP PSDENNVMIT SKVDHEIRII TCPSCGHSIE LEHQRGIHDL  60
PGLPAGVKFD PSDHEILEHL EAKVISDTLK LHPLIDEFIL TIDGENGICY THPEKLPGVN  120
KNGQVRHFFH RPSKAYTTGT RKRRKVHTEI DGGETRWHKT GKTRPVYIGG VLKGYKKILV  180
LYTNYGRQRK PEKTNWVMHQ YHLGENEEEK DGELVVSKVF YQTQPRQCGS LSIRKTVDNN  240
KSRSLSRQDS PILKTTNFVD YYNPPFASYD IGSQNRDIPP QLIQNLVVHG DSSSFVIPSN  300
ASKEK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-131HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-131HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618174.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_018631194.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-120NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1S4BRL10.0A0A1S4BRL1_TOBAC; NAC domain-containing protein 73-like
STRINGXP_009618174.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-123NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]