PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009618174.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 305aa MW: 34562.1 Da PI: 8.4614

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009618174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.8	1.3e-33	63	203	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d+e++ e+L++kv +++ + + i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ XP_009618174.1 63 LPAGVKFDPSDHEIL-EHLEAKVISDTlklhplI---DefiLtIDGEnGICYTHPEKLP-GVNKNGQVRHFFHRPSKAYTTGTRKRRKVHteidg 152 799*********9.99*99995554443...143333666657******.666777888**************74444665 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_009618174.1 153 gETRWHKTGKTRPVYI-GGVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 203 5778********.**********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-38	57	222	IPR003441	NAC domain
PROSITE profile	PS51005	33.136	63	222	IPR003441	NAC domain
Pfam	PF02365	3.5E-14	64	203	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MTWCSQSNSE TALPIIISAP PSDENNVMIT SKVDHEIRII TCPSCGHSIE LEHQRGIHDL 60 PGLPAGVKFD PSDHEILEHL EAKVISDTLK LHPLIDEFIL TIDGENGICY THPEKLPGVN 120 KNGQVRHFFH RPSKAYTTGT RKRRKVHTEI DGGETRWHKT GKTRPVYIGG VLKGYKKILV 180 LYTNYGRQRK PEKTNWVMHQ YHLGENEEEK DGELVVSKVF YQTQPRQCGS LSIRKTVDNN 240 KSRSLSRQDS PILKTTNFVD YYNPPFASYD IGSQNRDIPP QLIQNLVVHG DSSSFVIPSN 300 ASKEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-131	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-131	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618174.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_018631194.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-120	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1S4BRL1	0.0	A0A1S4BRL1_TOBAC; NAC domain-containing protein 73-like
STRING	XP_009618174.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-123	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]