PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617979.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 276aa    MW: 31171.9 Da    PI: 6.7843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-07155202455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  XP_009617979.1 155 SHSLAERVRRGKINEKLRCLQDIVPGC----YKTMGMAGMLDEITNYVQSLQ 202
                     8*************************8....355888999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15149219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-9149206No hitNo description
PROSITE profilePS5088814.608151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-5155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-7157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MADHFINSPF SLFNIDSSMD FMNQFPEIIN PCSSELSSFN LQSSMEFSHE NVFTQVAEFP  60
GNLQEYFQEN FHQDDKINAS VVPCDMVPIN ESKKRKTIDT PESSSAYSSP AVSANGTKRS  120
SKRRGNRVKS SDEKEEEKSK EVVHVRAKRG QATDSHSLAE RVRRGKINEK LRCLQDIVPG  180
CYKTMGMAGM LDEITNYVQS LQNQVEFLSM KLTAASSYYD FNSESDIRVS MQRAKAFEAL  240
KMQKSKKELG CEGLSSNQAG PYDHNFGSYP LLPYKN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617979.10.0PREDICTED: transcription factor BEE 1-like
SwissprotQ8GWK76e-62BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1S3X2K30.0A0A1S3X2K3_TOBAC; transcription factor BEE 3-like
STRINGXP_009617979.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.19e-60BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]