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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009617782.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
TALE |
| Protein Properties |
Length: 300aa MW: 33914.2 Da PI: 6.5762 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009617782.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 23.6 | 8.8e-08 | 249 | 282 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
k +yp+++++++L +++gL+ +q+ +WF N+R +
XP_009617782.1 249 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 282
469*****************************87 PP
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| 2 | ELK | 26.3 | 1.7e-09 | 203 | 224 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK +L++++++++ ++++E++
XP_009617782.1 203 ELKIELKQGFRSRIEDVREEIL 224
9*******************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010089 | Biological Process | xylem development |
| GO:0010192 | Biological Process | mucilage biosynthetic process |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MQEQGVGLMG SSTGGGIGGL GPLGDVSMVI SEDNQRQLKG EIATHPLYEQ LLSAHVACLR 60
VATPIDQLPL IEAQFSQSHH LLRSYASQHH SHSLSPHERQ ELDNFLAQYL LVLCSFKEQL 120
QQHVRVHAVE AVMACREIEQ NLQLLTGATL GEGSGATMSD DEDELQMDFS LDQSGGDAHD 180
LMGMGFGLPT ESERSLMERV RQELKIELKQ GFRSRIEDVR EEILRKRRAG KLPGDTTTVL 240
KNWWQQHSKW PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS VTSLKSKRKR
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 279 | 299 | RKRNWHSNSQSVTSLKSKRKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ477690 | 0.0 | KJ477690.1 Solanum tuberosum class II knox protein (HOX2) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G62990.1 | 1e-168 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
| Publications
? help Back to Top |
- Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
Plant Physiol., 2008. 147(3): p. 1004-16
[PMID:18467456] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - He JB, et al.
KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
J Integr Plant Biol, 2018. 60(6): p. 514-528
[PMID:29393579]
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