PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009617757.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 159aa MW: 18013.5 Da PI: 4.8755

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009617757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.9	1.4e-19	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+k +r++tf+kRr+g++KKA+EL Cda++avi fs g+++ + XP_009617757.1 9 KRIEDKAKRHTTFTKRRQGLFKKAKELVKRCDAQAAVITFSLAGNVFAF 57 79******************************************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.591	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.4E-24	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-24	3	74	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-19	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KAKELVKRCD AQAAVITFSL AGNVFAFGHP 60 SVDDIVNRYI VATSAPEGDE IPVHKETEKK DKDVVIENNV DQEDEETTSF ELPVGDMGME 120 ELEEFEVAMV EMKKKVVDRI NGIISSSKEE DLGLPYIQV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	2e-55	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617757.1	1e-113	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_009617758.1	1e-113	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_016448087.1	1e-113	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_016448088.1	1e-113	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1S3Y7W1	1e-111	A0A1S3Y7W1_TOBAC; agamous-like MADS-box protein AGL61
STRING	XP_009617757.1	1e-112	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	1e-19	M-type_MADS family protein