PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617734.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 332aa    MW: 37679 Da    PI: 4.9022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-15129180155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  XP_009617734.1 129 QRMTHIAVERNRRKQMNEYLSVLRTLMPQS---YVQRGDQASIVSGAINYVKELE 180
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.52E-15127184No hitNo description
Gene3DG3DSA:4.10.280.102.6E-15127184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-18128197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.005128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALEAVTQQQ QYLYALLGTA NWDGGSGSGS GFDYHNNEAF EYLENNQNVG EAQEYEDYSN  60
WNLPPPLLVD SQNDFNQWGQ NSSTYVLDHN FTIPDQLLQL ESPVEMSSTT RPRRRRTRSK  120
KNQEEVESQR MTHIAVERNR RKQMNEYLSV LRTLMPQSYV QRGDQASIVS GAINYVKELE  180
QQLQFLSGQK HSNDEKLQNV MGETSPFSEF FSIPQYSTTM TAATSENGGS GNEYYRNQQL  240
AATADIEVTM VENHANLKIR SKRRPRLLPR IISGLESLML SVLHLNVSKV DQFVLCSLSL  300
KVEEDCKLSS VEDIAAVVNQ ILGRIHEEAL LA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117RPRRRRTR
2129140RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331331e-106AC233133.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-57c7 map 1, complete sequence.
GenBankHG9755131e-106HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617734.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T42e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S4CNR60.0A0A1S4CNR6_TOBAC; transcription factor bHLH96-like
STRINGXP_009617734.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]