PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009617305.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 39673.3 Da PI: 4.6827 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.7 | 1.5e-06 | 248 | 286 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A+eYIk L XP_009617305.1 248 VRKEKMGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 286 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.436 | 237 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-9 | 247 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-12 | 247 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-7 | 247 | 290 | No hit | No description |
SMART | SM00353 | 0.0015 | 248 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MADEFQVGVC GENSWWNSTK NIFGLSPNCV SSIYDPIGHL ISWPISDLLD MKTKSSDDST 60 LQILGIDLSL PSSTPDWNHS PNDKLDDTYL SMLQEDLNSS LNYQQENAVN CPKLKRNFSS 120 ITEDSSTNSF NKPMNQDFPY YSELLQTLFD TDPNQQPQQS FYTNNQPINC TSSTKYKQNL 180 DDFAPSLPTH LLKPSSEILA NLPNLFSKSN IEEIPESTSS SLSKNSSNEP SYKRPRIETP 240 SPLPTFKVRK EKMGDRITAL QQLVSPFGKT DTASVLQEAI EYIKFLHDQV NVLSNPYMKK 300 GSPTQCQQVK EQEGLKQDLR SQGLCLVPIS STFPATAETT MDFWTPKFGA TFK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617305.1 | 0.0 | PREDICTED: transcription factor bHLH112-like isoform X1 | ||||
TrEMBL | A0A1S3XCN8 | 0.0 | A0A1S3XCN8_TOBAC; transcription factor bHLH112-like | ||||
STRING | XP_009617305.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.3 | 1e-51 | bHLH family protein |