PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617256.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 964aa    MW: 107904 Da    PI: 6.1402
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.92.3e-54131273116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwlk+ e++ iL n+e+h+l++e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+nptfqr
  XP_009617256.1  13 REaQIRWLKPAEVLFILRNHENHQLSNEAAQKPPSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEQNPTFQR 107
                     55589****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ ++e+ivlvhy++
  XP_009617256.1 108 RSYWMLDPAYEHIVLVHYRD 127
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.2628134IPR005559CG-1 DNA-binding domain
SMARTSM010764.6E-7611129IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4714127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-9393480IPR013783Immunoglobulin-like fold
PfamPF018333.3E-9396478IPR002909IPT domain
SuperFamilySSF812964.2E-18397479IPR014756Immunoglobulin E-set
CDDcd001022.52E-5398480No hitNo description
Gene3DG3DSA:1.25.40.207.2E-13593688IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.939594686IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-13598688IPR020683Ankyrin repeat-containing domain
CDDcd002042.61E-11614686No hitNo description
PROSITE profilePS5008811.06627659IPR002110Ankyrin repeat
SMARTSM002480.0038627656IPR002110Ankyrin repeat
PfamPF136374.1E-5629685No hitNo description
SMARTSM0001515744766IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638745774IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.72E-5796851IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.4803825IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529804833IPR000048IQ motif, EF-hand binding site
PfamPF006120.014806824IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0056826848IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791828852IPR000048IQ motif, EF-hand binding site
PfamPF006126.0E-5829848IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MAESGYDIND LVREAQIRWL KPAEVLFILR NHENHQLSNE AAQKPPSGSL FLFNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE QNPTFQRRSY WMLDPAYEHI  120
VLVHYRDITE GRQNPAFMSE SSPISSTFSP SPSSYSTQQT GSTLIAGESY EQYQNQSSPG  180
EICSDAVINN NGMSDIIGRT KEVMSSPGLE MSQALRRLEE QLSLNDDSFK EIDPLYADAI  240
SDDSSLVEMQ GNSNSLLLQH HSAESSESHH QHLTQDGHVW KDMLDHYGVS TAAESLTKSL  300
PKLDENGMLQ ISSERGAIEA YQSYKWPNFS EKEAQKAPIP AFKQLENFKY PAYSPGVTAF  360
GSNSDQCTTI FDQDQIGTSF EDEMSLTISQ KQKFTFRDIS PDWGYSSEAT KVVIIGSFLC  420
NPSECMWTCM FGDTEVPVQI IQEGVICCQA PPHLPGKVTL CVTSGNRESC SEVKEFEYRD  480
KPDDCARNNR SDVEGAYKST EELLLLVRFV QLLLLDLSAQ KEDSSMLSND FLEKCKANED  540
SWSQVIESLL FGTSTSTITI DWLLQELLKD KFQQWLSYKL QRKDNQMGCS LSKKEQGIIH  600
MVSGLGFEWA LHPILNAAVS VNFRDINGWT ALHWAARFGR EKMVASLIAS GASAGAVTDP  660
SSRDPVGKTA ASIASSCGHK GLAGYLSEVA LTSHLSSLTL EESELSKGTA DVEAEKTISS  720
ISNTSATTNE DQRSLKDSLA AVRNAAQAAA RIQSAFRAHS FRKRQQRESA VTATASGDEY  780
GILSNDIHGL SAASKWAFRN TRDYNSAALA IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG  840
YQVRKQYKVC WAVGILEKVV LRWRRRGVGL RGFRHDTESI DESEDEDILK VFRKQKVDAA  900
LDEAVSRVLS MVESPGARQQ YHRILEKYRQ AKAELEGAES ESASTAHGDM SNMENDDIYQ  960
FPSY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660480.0JN566048.1 Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617256.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A344X3880.0A0A344X388_NICTO; Calmodulin-binding transcription activator 3
STRINGXP_009617256.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]