PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009617136.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 351aa MW: 40051.1 Da PI: 5.0671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009617136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7.2e-11	282	322	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_009617136.1 282 RRRREKINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 322 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.301	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	275	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-13	277	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-12	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.20E-11	281	326	No hit	No description
Pfam	PF00010	3.1E-8	282	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MESVGTFFDE ECQSLSRMFF TENSDFLFQL QCDHPSALTW HDQEANKNVT DNTNIEGSFY 60 SSPSHTFNSN IKYFSQENSN DSRGSDGMFF LNNTSHEYLQ HYNGVTNLLQ VTNNHPDEST 120 DFYMMGHKNL ENSSVNPAFQ DDDFMKEMVS LKDDIGKEML LKRKLHEVEL QSVAEDQKLE 180 ETKNPKKSKV SREGPKNKKS AQPKVKKNQK NIQINNEEVG DQQETSNAAN CKSGQSISSC 240 SSEEDSNASQ ELNTNSDTKS NFNSKTRASR GTATDPQSLY ARRRREKINE RLKILQNLVP 300 NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDMWMYAPIA YNGMEMDLSH T

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MESVGTFFDE ECQSLSRMFF TENSDFLFQL QCDHPSALTW HDQEANKNVT DNTNIEGSFY  60
SSPSHTFNSN IKYFSQENSN DSRGSDGMFF LNNTSHEYLQ HYNGVTNLLQ VTNNHPDEST  120
DFYMMGHKNL ENSSVNPAFQ DDDFMKEMVS LKDDIGKEML LKRKLHEVEL QSVAEDQKLE  180
ETKNPKKSKV SREGPKNKKS AQPKVKKNQK NIQINNEEVG DQQETSNAAN CKSGQSISSC  240
SSEEDSNASQ ELNTNSDTKS NFNSKTRASR GTATDPQSLY ARRRREKINE RLKILQNLVP  300
NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDMWMYAPIA YNGMEMDLSH T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	286	RRRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617136.1	0.0	PREDICTED: transcription factor bHLH84-like
TrEMBL	A0A1S3Y813	0.0	A0A1S3Y813_TOBAC; transcription factor bHLH84-like
STRING	XP_009617136.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	6e-52	bHLH family protein