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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009617136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 40051.1 Da PI: 5.0671 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.6 | 7.2e-11 | 282 | 322 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_009617136.1 282 RRRREKINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 322 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.301 | 272 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-14 | 275 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 277 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-12 | 278 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.20E-11 | 281 | 326 | No hit | No description |
Pfam | PF00010 | 3.1E-8 | 282 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MESVGTFFDE ECQSLSRMFF TENSDFLFQL QCDHPSALTW HDQEANKNVT DNTNIEGSFY 60 SSPSHTFNSN IKYFSQENSN DSRGSDGMFF LNNTSHEYLQ HYNGVTNLLQ VTNNHPDEST 120 DFYMMGHKNL ENSSVNPAFQ DDDFMKEMVS LKDDIGKEML LKRKLHEVEL QSVAEDQKLE 180 ETKNPKKSKV SREGPKNKKS AQPKVKKNQK NIQINNEEVG DQQETSNAAN CKSGQSISSC 240 SSEEDSNASQ ELNTNSDTKS NFNSKTRASR GTATDPQSLY ARRRREKINE RLKILQNLVP 300 NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDMWMYAPIA YNGMEMDLSH T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 286 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617136.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
TrEMBL | A0A1S3Y813 | 0.0 | A0A1S3Y813_TOBAC; transcription factor bHLH84-like | ||||
STRING | XP_009617136.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA639 | 22 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 6e-52 | bHLH family protein |