PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009617134.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 292aa MW: 32014.1 Da PI: 9.4581

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009617134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.6e-14	88	132	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky XP_009617134.1 88 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 132 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.997	81	137	IPR017930	Myb domain
SuperFamily	SSF46689	4.41E-17	83	138	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-17	84	135	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	85	135	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-11	87	132	IPR009057	Homeodomain-like
CDD	cd00167	1.56E-9	88	133	No hit	No description
Pfam	PF00249	1.7E-11	88	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSSACCDESS VEVVAGGGVG GEIMLFGVRV KVDPMRKSVS LNNLSQYEQP NANNSADTSK 60 VAEEGYASAD DAVQHHSNSG RERKRGVPWT EEEHKLFLLG LQKVGKGDWR GISRNFVKTR 120 TPTQVASHAQ KYFLRRSNLN RRRRRSSLFD ITTDSVSAMP IEEGKNKQEI PVPPVVASSP 180 TLPTTIEATK TNAFPVAPIM LPAQIDQSRE SPTLLQRNQV NSYTPVRPLP MLSMPNPSTV 240 FDLNVNQISE VEPLSLRLSL SLDQGQASST RHHSAFKVMP SFSNGESIIS VA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC160095	6e-78	AC160095.1 Solanum lycopersicum clone BB, complete sequence.
GenBank	AC209511	6e-78	AC209511.1 Solanum lycopersicum chromosome 6 clone C06HBa0153G23, complete sequence.
GenBank	AY796114	6e-78	AY796114.1 Lycopersicon esculentum clone Le_HBa 153G23 putative transposase, putative BAH domain-containing protein, putative permease I, putative pollen specific LIM domain-containing protein, putative betaine aldehyde dehyrogenase, EDS1, and putative ribosomal-protein S6 kinase-like protein genes, complete cds.
GenBank	HG975445	6e-78	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	6e-78	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617134.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	1e-126	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1S4AEE6	0.0	A0A1S4AEE6_TOBAC; transcription factor MYB1R1-like
STRING	XP_009617134.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	8e-63	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]