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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009617116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 128aa MW: 14086.8 Da PI: 4.2952 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.3 | 0.00015 | 7 | 43 | 19 | 54 |
HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ L ++l + s ++s+ ++Ka+i +A +YI +L XP_009617116.1 7 KIALLNQHLEQlGSITNSPSVNKASIIVHASKYIEEL 43 78888888888655677777**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.25E-5 | 10 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-4 | 11 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MGSKDQKIAL LNQHLEQLGS ITNSPSVNKA SIIVHASKYI EELKERIDKL NEDVSTSQPS 60 HVDDENSLPL VTVETLEKGF LINVFSEKNC PGLLVSILEA FEELGLELSD ARVSCSDSFR 120 LEAVSENT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617116.1 | 1e-87 | PREDICTED: transcription factor bHLH61-like isoform X2 | ||||
TrEMBL | A0A1S3ZCI7 | 8e-86 | A0A1S3ZCI7_TOBAC; transcription factor bHLH61-like isoform X2 | ||||
STRING | XP_009617115.1 | 1e-85 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10570.1 | 3e-07 | bHLH family protein |