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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009617106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 15225.5 Da PI: 9.3302 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.8 | 6.9e-14 | 13 | 58 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 i + r vtfskRr+g++KK L +++a+va i+fs+tgk y+ XP_009617106.1 13 IIKEASRMVTFSKRRKGLFKKTLQLESMTGARVAAIVFSPTGKPYT 58 5567789***********************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-17 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.245 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-18 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-13 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-18 | 13 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.33E-15 | 18 | 58 | No hit | No description |
PRINTS | PR00404 | 4.1E-13 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-13 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MGTGKKKIEI KQIIKEASRM VTFSKRRKGL FKKTLQLESM TGARVAAIVF SPTGKPYTCG 60 DVSSAIDRHF SSSIDPLSGS GDVCISGSRS TTSRNGLRNW LENIDVEELL LLKEQLEGTR 120 EKLACMEDSE SFLALFMS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617106.1 | 3e-97 | PREDICTED: MADS-box transcription factor 23-like | ||||
TrEMBL | A0A1S4D6M9 | 1e-81 | A0A1S4D6M9_TOBAC; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_009617106.1 | 1e-96 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17310.1 | 3e-13 | M-type_MADS family protein |