PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009617028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 253aa MW: 29436.2 Da PI: 6.1437 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.2 | 3e-34 | 29 | 120 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++ weF++++F+kg+++ll++ XP_009617028.1 29 FLLKTYMLVEDPATDDVVSWNSDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSR---------WEFSNDKFRKGERDLLCD 114 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_009617028.1 115 IRRRKA 120 ***985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.6E-36 | 22 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.89E-33 | 24 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.5E-52 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.1E-31 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MMEVLFEEVQ SDEKSLLLEY VRKSSPSPFL LKTYMLVEDP ATDDVVSWNS DGTAFVVWQP 60 AEFARDLLPT LFKHSNFSSF VRQLNTYGFR KIATSRWEFS NDKFRKGERD LLCDIRRRKA 120 WTNKQQPNNN NNNNNGQSEC ANSNKKETEE DQRSSSSTSS SSEFTILVDE NKRLKMENGV 180 LSSELSVMKN KCKELIDIVT IFAKNPEKEE KKQQDERPML FGVRLEVQEE MERKRKRAEL 240 TETASVFLSQ LCK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 4e-21 | 27 | 118 | 2 | 104 | Putative transcription factor |
5d5x_B | 4e-21 | 27 | 118 | 2 | 104 | Putative transcription factor |
5d5x_E | 4e-21 | 27 | 118 | 2 | 104 | Putative transcription factor |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ538607 | 1e-121 | AJ538607.1 Nicotiana tabacum cDNA-AFLP-fragment BC3-M41-017. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617028.1 | 0.0 | PREDICTED: heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 5e-67 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A1S4AR32 | 0.0 | A0A1S4AR32_TOBAC; heat stress transcription factor B-3-like | ||||
STRING | XP_009617028.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41690.1 | 2e-64 | heat shock transcription factor B3 |