PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616981.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 578aa    MW: 65614.3 Da    PI: 7.6128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.5e-1826116199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   d + +++l++p  fa++ ++   ++++  led+sg++W+v++  + ++g+  +++GW +F +++gL+ gDf+vF++++ + f   v+
  XP_009616981.1  26 FFKVM--IDKSFRKILYFPPMFARSVSHL--TDQETYLEDSSGQRWRVTV--CDHKGSLAIRQGWPKFSSEHGLNLGDFLVFYYVEGQYF--IVQ 112
                     89999..88999999**********9766..4568***************..*******************************9876666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_009616981.1 113 IYDK 116
                     9887 PP
2B3314.6e-104965711492
                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     + l lp +  +++  ++ k e   + l+ ++ + W + +   ++sg  vlt+GWk F+ a gL+ gD ++F+l++  + e+
  XP_009616981.1 496 DFLELPESW-RKYlmKKAKLERWIIFLRGPDKKIWPILY--HRRSGVDVLTNGWKFFAAAYGLNRGDDCLFELEN--QLEC 571
                     556666665.3665544455667799999**********..9999999************************865..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2023119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-2223119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0724117IPR003340B3 DNA binding domain
CDDcd100179.88E-1825115No hitNo description
SMARTSM010191.3E-1326117IPR003340B3 DNA binding domain
PfamPF023621.5E-1526116IPR003340B3 DNA binding domain
PROSITE profilePS5086310.123483578IPR003340B3 DNA binding domain
SMARTSM010190.032488576IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-12491570IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-9492567No hitNo description
Gene3DG3DSA:2.40.330.102.3E-10495569IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MGCEKEASDE CKQNSLLFHG KRVSSFFKVM IDKSFRKILY FPPMFARSVS HLTDQETYLE  60
DSSGQRWRVT VCDHKGSLAI RQGWPKFSSE HGLNLGDFLV FYYVEGQYFI VQIYDKSGCQ  120
KIKFYSDFCK GKRKTRTYPE KTSQVKLLQT TDINPVNKRS KISAVSESEK VTCKAHITKF  180
ATNIDADTGK GQLVYPAVYV DESFCMVDRD AQYHQGDDRL CLHLSSFEMP ASKPLAEGTS  240
SLLKADDGNS NHVETNLRSQ TEPNLVVVAD YLNSEELLPK FEAEITGSDM VPAEDIPLLS  300
QKDQNDCPSG IISSSFLKPA ANVNKNDDVS NVTKYQNHWM STDTNCHMML QSDNKDGRCT  360
GINQITREKS NEASQFARET RLVKKEFEET AAKAYYPARA ISARETRLVK KEFEETAAKA  420
YYPARAISAR ETRLVKKEFE ETAAKAYYPA RAISDSGKEP ANGNEKVIKS EPADSGDMPS  480
LTAVSYSCLL EVDGRDFLEL PESWRKYLMK KAKLERWIIF LRGPDKKIWP ILYHRRSGVD  540
VLTNGWKFFA AAYGLNRGDD CLFELENQLE CIFAVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616981.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X1
TrEMBLA0A1J6IKJ00.0A0A1J6IKJ0_NICAT; B3 domain-containing protein
STRINGXP_009616981.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.17e-11B3 family protein