PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616977.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 282aa MW: 32470.3 Da PI: 9.6765

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	116	139	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C ksF+ L +H + H XP_009616977.1 116 WKCGYCRKSFRAEKFLDQHFDNrH 139 58**********999999976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.725	116	141	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	118	139	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MENLRQRRAK NPYSLLLSFV LIIAVSSSIS ATSPLSHSDQ GTEQHASSPE QDKPRVHEVH 60 CSRDRSRAAW KVIEEYLMPF VEREKYELPR QCRLHPSNDI FRDQEEHKIH LDVNEWKCGY 120 CRKSFRAEKF LDQHFDNRHS NLLDVSHSKC LADVCGALHC DLVMEFKSKK AKCNPAAAAK 180 NRHLCEGLAD SCFPANKSPS ATRLHELFLR QFCDAHTCAG GRKPFSRGGK KHTNRFYLAA 240 SVLTLMLLPL FYLIVYLYQR EMKKGTQELR RITKVGRKAK PS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014430	0.0	BT014430.1 Lycopersicon esculentum clone 133748R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616977.1	0.0	PREDICTED: uncharacterized protein LOC104109397
Refseq	XP_016495902.1	0.0	PREDICTED: uncharacterized protein LOC107814911
Refseq	XP_018630826.1	0.0	PREDICTED: uncharacterized protein LOC104109397
Refseq	XP_018630827.1	0.0	PREDICTED: uncharacterized protein LOC104109397
TrEMBL	A0A1S4C416	0.0	A0A1S4C416_TOBAC; uncharacterized protein LOC107814911
STRING	XP_009616977.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8084	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-105	C2H2-like zinc finger protein