PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616845.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 115aa MW: 13483.2 Da PI: 6.7942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	83	111	1	29
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk 29 ++++h e+Er+RR+++ + ++ Lr+ lP XP_009616845.1 83 KKVMHREIERQRRQEMATLYASLRQQLPL 111 6899***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.6E-7	79	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.86E-5	80	111	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-5	81	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.508	82	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-5	83	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MDNFHSMLPL QQDIDDNDSH QFLYTNPCNF LYQQDLITDF APLELDKNTL RFNNNDNNKK 60 GNKVGKSSAA SLPVEKTSDD KQKKVMHREI ERQRRQEMAT LYASLRQQLP LEIIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616845.2	2e-80	PREDICTED: uncharacterized protein LOC104109296
TrEMBL	A0A1S3YKF9	2e-66	A0A1S3YKF9_TOBAC; transcription factor bHLH118-like
TrEMBL	A0A1U7YLP6	2e-66	A0A1U7YLP6_NICSY; transcription factor bHLH118-like
STRING	XP_009616845.1	2e-80	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-13	bHLH family protein