PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009616791.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 29093 Da PI: 9.8989 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.9 | 1.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKK +E+SvLCda+va+i+fs +gklyeys+ XP_009616791.1 9 KRIENKISRQVTFSKRRSGLLKKTHEISVLCDADVALIVFSAKGKLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 96 | 5.8e-32 | 76 | 173 | 2 | 99 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++++ ++++++ e+++ e+ kL ++ie Lqr++Rh++GedL+s l+e + LeqqL+++lk+iR++Kn+l++e+i++lqkkekelqe+n+ ++k XP_009616791.1 76 AERKLNANDSEPKENWTLEYPKLMSRIELLQRNIRHYMGEDLDSFGLREFHGLEQQLDTALKRIRTRKNQLMHESISQLQKKEKELQEQNHLMSK 170 5566777888889*******************************************************************************999 PP K-box 97 kle 99 kl+ XP_009616791.1 171 KLK 173 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.651 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.69E-41 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-27 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.08 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTHEISVLCD ADVALIVFSA KGKLYEYSTE 60 SSMESILERY ESYSYAERKL NANDSEPKEN WTLEYPKLMS RIELLQRNIR HYMGEDLDSF 120 GLREFHGLEQ QLDTALKRIR TRKNQLMHES ISQLQKKEKE LQEQNHLMSK KLKGNEKQQT 180 EDAQWGKPNP GQSSTPFILP QIPSQSPPHV PNLTIGGPFQ STGFTSTDEG QTRHGSNSLI 240 PPWMLHHLRN KG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 6e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 6e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 6e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 6e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616788.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_009616789.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_009616790.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_009616791.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_009616792.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_009616793.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_016492111.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X1 | ||||
Refseq | XP_016492112.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Refseq | XP_016492113.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Refseq | XP_016492114.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Refseq | XP_016492115.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Refseq | XP_016492116.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Refseq | XP_016492117.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Refseq | XP_016492118.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Swissprot | D7SMN6 | 1e-100 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A1S4BTA0 | 0.0 | A0A1S4BTA0_TOBAC; agamous-like MADS-box protein AGL8 homolog isoform X1 | ||||
TrEMBL | A0A1S4BTA3 | 0.0 | A0A1S4BTA3_TOBAC; truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
STRING | XP_009616788.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 5e-81 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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