PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009616658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36893.5 Da PI: 6.8717 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.8e-52 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+GfrFhPtd+elv++yL++k++g+++++ ++i+e+d+yk++Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v + XP_009616658.1 14 LPAGFRFHPTDDELVQHYLCRKCAGQPISV-SIIAEIDLYKFDPWQLPEKALHGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGK- 106 799***************************.89***************8888899*************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+ap+g kt+W+mheyrl XP_009616658.1 107 -PKTLGIKKALVFYAGKAPRGIKTNWIMHEYRL 138 .778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-61 | 9 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.567 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-27 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MIKGVLRNQQ QLELPAGFRF HPTDDELVQH YLCRKCAGQP ISVSIIAEID LYKFDPWQLP 60 EKALHGEKEW YFFSPRDRKY PNGSRPNRAA GTGYWKATGA DKPVGKPKTL GIKKALVFYA 120 GKAPRGIKTN WIMHEYRLAN VDRSAGKSNN LRLDDWVLCR IYNKKGTLEK YYNVDNKEHL 180 GFEEVEEEEE KPKILPFSQS NELIARLAPT PMPSRPQSMP GSDYFHFETS ESMTRMHTTN 240 SSSGSEYVLS SCDKEVQSAP KWDDLDKALD FQLNYLDNFQ YDPFEAQMQL QNCNTDQFNS 300 FQDMFVYMQK PYYSGANQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-84 | 9 | 170 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ413134 | 0.0 | HQ413134.1 Nicotiana tabacum NAC transcription factor (NAC) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616658.1 | 0.0 | PREDICTED: protein ATAF2-like isoform X2 | ||||
Swissprot | Q39013 | 1e-114 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1U7XH85 | 0.0 | A0A1U7XH85_NICSY; NAC domain-containing protein 2-like | ||||
STRING | XP_009616658.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-116 | NAC family protein |