PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616489.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 345aa    MW: 39932.6 Da    PI: 9.1418
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1233.3e-38982503131
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...eaessss 80 
                      kkdrhski T++g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k  ikel ++              s +s sec   +  ++s 
  XP_009616489.1  98 SKKDRHSKINTAKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKSrisklrcstvmganSETSTSECevvSGIDESP 192
                     69*************************************************************99999999999887444446675452222222 PP

             TCP  81 sasnsssg..........kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                     s+++   +          k++++++++ ks ++aa  + +akesr++ar+rarert+ k++
  XP_009616489.1 193 SNHK---AnakgnscnkeKKKEKEKEKDKSVRRAAFYHPFAKESRKQARERARERTKLKKN 250
                     2222...133456677744444444777778888889*******************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-4198249IPR005333Transcription factor, TCP
PROSITE profilePS5136932.13599157IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.211231248IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MYNSSNYSCN YNPIFSSNLF NIPSPCMQYE HELFFQYYHD QLQQNLDDTL AEISTETAII  60
NTADSSKDEA IISRNELEQD QEARKNKKGK VSSNKRVSKK DRHSKINTAK GPRDRRIRLS  120
IDIARNFFNL QDMLRFEKAS KTLEWLLIKS KSDIKELSKS RISKLRCSTV MGANSETSTS  180
ECEVVSGIDE SPSNHKANAK GNSCNKEKKK EKEKEKDKSV RRAAFYHPFA KESRKQARER  240
ARERTKLKKN FCESHRLNLR SWNFSQRGEE SAGYTSMNHP CQEMQAEVEE LTSHNEKQLL  300
LGTKVNIGYD CNLVATGNWN PFSIFNYQQN AEIPHEHQIT DFPFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616489.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A314L1540.0A0A314L154_NICAT; Transcription factor tcp18
STRINGXP_009616486.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-24TCP family protein