PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616457.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 227aa MW: 25441.1 Da PI: 9.5796

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616457.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.9e-12	38	89	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR+ Ns + Lr+llP + + kKls +++ ++++YI +L XP_009616457.1 38 KKLNHNASERDRRKVFNSLCSSLRSLLPAtD---HTKKLSFPATVARVIKYIPDL 89 6789***********************55...7777************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.601	37	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-12	37	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	38	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	38	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-6	43	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MMAVSSPLFS NFGVCLADPK NQEVNTIEAP VSRDGTVKKL NHNASERDRR KVFNSLCSSL 60 RSLLPATDHT KKLSFPATVA RVIKYIPDLK KDVERLTQKK EDLTLRSIPK KEYSADFNKQ 120 TIRGGIQSSL SVISANQVGN REVIIHISTL KINKSSFAEA VSELEDEGLL LLNASSFETL 180 GDRVFYNLHF QAQGTLPINV QILRDKLLSY YEKEDKLLPP WISGFST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616456.1	1e-142	PREDICTED: transcription factor ORG2-like
TrEMBL	A0A1S3WY53	1e-139	A0A1S3WY53_TOBAC; transcription factor ORG2-like
STRING	XP_009616456.1	1e-141	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-47	bHLH family protein