PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616285.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 209aa MW: 23176.7 Da PI: 7.8375

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.6	8.9e-33	115	171	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+e+ekkl k+rkpylheSRh hAl+R+Rg+gGrF XP_009616285.1 115 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 171 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.2E-35	113	174	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.593	114	174	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.3E-27	116	171	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.2E-23	117	139	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	119	139	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.2E-23	148	171	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MTSSLHYHSD GSENEQPEKQ SEAHSESSSP ATGMSVPGIA TPNMHYVMPT QLGNGNAMLQ 60 AQTAYPYPDP YYRSIFAPYD AQPYPTQPYP AQPMVHVQLM GIQQAGVPLP SDAIDEPVFV 120 NAKQYHGILR RRQSRAKAES EKKLLKARKP YLHESRHLHA LKRARGCGGR FTAKKTDNQQ 180 KQDESGDNSQ VNINLESEKN EVASAENAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	114	183	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013370	0.0	BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616285.1	1e-155	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X3
Refseq	XP_016464645.1	1e-155	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X3
Swissprot	Q84JP1	3e-60	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S3ZJH1	1e-154	A0A1S3ZJH1_TOBAC; nuclear transcription factor Y subunit A-7 isoform X3
STRING	XP_009616281.1	1e-143	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-49	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]