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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009615803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 37683.6 Da PI: 5.2495 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.6e-09 | 190 | 237 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq XP_009615803.1 190 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 237 8*************************9....89999***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.66E-10 | 184 | 241 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-15 | 184 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.634 | 186 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-15 | 189 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-7 | 190 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-9 | 192 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MESTQVRSAS CGGKAGETAT GFHHICGEGQ SIIMPVPTEA AGNSFTALLE LPPNQALDLL 60 VHSDEMGSAE LSLPDNHNKP YYSSPLIDGG SAGEFAGEFS VFAAGNSPEN SSFPSNSQFV 120 KQEPVDSDSN PNSSPEFSNP TVDQKTTKRK ERQKKGKESS SKKSKRSAND TSEKLPYVHV 180 RAARGQATDS HSLAERARRE KINARMKLLQ ELVPGCNKIS GTAMVLDEII NHVQSLQRQV 240 EFLSMRLAAV NPRVDFNLDS LFATESGSAV DSNFASIVAP SIWPEGQTSG NRNQYQQLLQ 300 IDGFNQPVWV REEDNSSFIT PENSFLTYDS SANSASLHQN QLKMEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615803.1 | 0.0 | PREDICTED: transcription factor bHLH48 isoform X2 | ||||
Refseq | XP_016452305.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X2 | ||||
TrEMBL | A0A1S3YJM3 | 0.0 | A0A1S3YJM3_TOBAC; transcription factor bHLH48-like isoform X2 | ||||
STRING | XP_009615802.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-69 | bHLH family protein |