PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009615646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 82aa MW: 9132.24 Da PI: 8.7779 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 31.4 | 2.5e-10 | 29 | 48 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C+ CgttkTplWR gp g+k XP_009615646.1 29 CADCGTTKTPLWRGGPAGPK 48 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.723 | 23 | 46 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 0.005 | 23 | 65 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.37E-5 | 24 | 47 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-7 | 28 | 46 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 9.4E-8 | 29 | 48 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MVDLSDKSIR SEEMSSEISS PERSDVKTCA DCGTTKTPLW RGGPAGPKEK DKSASGVEQR 60 RQETKEINGI WKQKHWTTAP KL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239796.1 | 2e-20 | GATA transcription factor 17-like isoform X2 | ||||
Refseq | XP_006345974.1 | 2e-20 | PREDICTED: GATA transcription factor 17-like isoform X3 | ||||
Refseq | XP_006345975.1 | 2e-20 | PREDICTED: GATA transcription factor 17-like isoform X4 | ||||
Refseq | XP_015076167.1 | 2e-20 | GATA transcription factor 17-like isoform X2 | ||||
TrEMBL | M1C5G5 | 4e-19 | M1C5G5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g054400.2.1 | 5e-18 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400060241 | 5e-18 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 2e-11 | GATA transcription factor 23 |