PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009615270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 378aa MW: 43830.1 Da PI: 7.0782 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.7e-53 | 61 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yLkkkv+++k++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_009615270.1 61 VPPGFRFHPTEEELLQYYLKKKVANEKIDL-DVIQEVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 154 69****************************.9***************964444222455************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++ +g++ktLvfykgrap+g+k+dW+mheyrl XP_009615270.1 155 YS-NSRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 189 **.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-59 | 50 | 223 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.046 | 61 | 223 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-28 | 62 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MCPLHFFLDL YKFLYLSFSV SALTFIYSCT SFLLYSKSRT KQKIISMPDD MSISVNGQSQ 60 VPPGFRFHPT EEELLQYYLK KKVANEKIDL DVIQEVDLNK LEPWDIQEKC KIGSTPQNDW 120 YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIYSNSRR IGMRKTLVFY KGRAPHGQKS 180 DWIMHEYRLD DHINDHSCNI VCNVSMGEST QEEGWVVCRI FKKKNHFKSL EMVNPSISDT 240 RINQRLYPND EGALEQLLQY MRNTCKEENH ANYDINFNDK FMQLPTLDSP NSSYGDFPKS 300 INSEGGLNNW IAVDRLVASH LNGQTNDNYN HDYQHQYSSN GGGGTTHNHD YNEECDLWNF 360 SRVSTNDHSL CHVSNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-51 | 55 | 229 | 9 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ686944 | 0.0 | JQ686944.1 Nicotiana tabacum cultivar SR1 NAC secondary wall thickening promoting factor 3 (NST3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615270.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like isoform X1 | ||||
Swissprot | Q84WP6 | 1e-122 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1S4BCS0 | 0.0 | A0A1S4BCS0_TOBAC; NAC domain-containing protein 43-like | ||||
STRING | XP_009615269.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-114 | NAC family protein |