PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615170.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 658aa    MW: 76059 Da    PI: 7.7602
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.79e-1948131189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YA+e+GF vr+++s  ++++ge + + ++Cs +g+++ ++ +     r  +etrtgC  +++++  +++ w+v ++ leHnH l
  XP_009615170.1  48 NYYNCYAREIGFCVRVKNSWFKRNSGEKYGAVLCCSSQGFKRIKDVN-----RLCKETRTGCPGMIRMRIVDSKGWRVLEVTLEHNHLL 131
                     69*****************************************9988.....9999*******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-1648131IPR004330FAR1 DNA binding domain
PfamPF105515.5E-19249343IPR018289MULE transposase domain
PROSITE profilePS509669.891537573IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-5548575IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTPFVILKFK PKKEEASLDG EQDVTGQGSG RLQEIESDRV RWLDDAYNYY NCYAREIGFC  60
VRVKNSWFKR NSGEKYGAVL CCSSQGFKRI KDVNRLCKET RTGCPGMIRM RIVDSKGWRV  120
LEVTLEHNHL LGAKAYKFIK KTGAGNKKXL DSNYDAEVRT IKLYRALVID AGANWNANFX  180
RKEVQNFSDC HDKLNLRKGD TQAMYNYFCR MQLTNPNFFY LMGLNDEGQL TTVFWSDVRX  240
RAYAYSIDVI YFDNSYLSNK YEIPLVAFVG TNHHGQSLLL GCGLLAGEAK ASYIPCVFKA  300
SLTCSLGCFP QTIITERCKI LESAISEVIP KSFHXFALSH IMREVPEKLG GLCNYDAIRK  360
ALIKTIYEAL KPFDFEAAWR FIIQRFGVGD HEWLLSLYDD RAKWALVDLK DTFFAGMATA  420
RCNETLTIFF DKYLHKQSPL KEFLDKNEXA LQKKNKEEAV ADTESRNSNP ELKTRCSFEL  480
QLSKVYTREI FKRFQLEVDD MYSCFSTTQL HVDGQMVTFL VKEHVLEEGN RREIRDYEVL  540
YNRAAAEARC ICSCFNFYGY MCRHALCVLN LNGVEEIPSK YILSRWKNDY KRLCESDLES  600
SSTEFTEHVX WFSXLYRSVL QVMQEGVISL DHXKVAPSAF EESLTRVHHI EENINVMA
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615170.10.0PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A1U7VP900.0A0A1U7VP90_NICSY; protein FAR1-RELATED SEQUENCE 6
STRINGXP_009615170.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]